May 11-13, 2011 The 10th KCJ Bioinformatics Training Course and Symposium, Jeju, KoreaOriginal website: http://kcj2011.kobic.re.kr
Announcement
Dear Colleague, it is our pleasure to announce that the 10th Korea-China-Japan Bioinformatics Training Course and Symposium will take place in Jeju island, Korea. The 10th anniversary meeting will be held on May 11 (Wed) - 13 (Fri), 2011. The aim of this meeting is to promote bioinformatics research activity in the three Asian countries through scientific exchange. In addition, we will provide a couple of lectures regarding Next Generation Sequencing (NGS) analysis and systems biology as the special topics for the 10th anniversary of this meeting. We expect that it would be greatly helpful for your ongoing and future researches in bioinformatics.
Outline
Venue
Ocean Suites Hotel (2nd floor, Camelia Hall) at Jeju IslandPeriod
- Training Course: May 11 (Wed) - May 12 (Thu), 2011
- Symposium: May 13 (Fri), 2011
- Poster presentation: May 11, 18:00-20:00
- Mounting: May 11, 9:00-13:00
- Removal: May 12 by 18:00
Organizers
- Korean BioInformation Center (KOBIC) at Korea Research Institute of Bioscience and Biotechnology (KRIBB)
- Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences（LSB)
- Shanghai Center for Bioinformation Technology (SCBIT)
- Japan Science and Technology Agency (JST)
- Center for Information Biology and DDBJ (CIB-DDBJ) at National Institute of Genetics (NIG)
Trainees
- Ten trainees from each of the three countries, 30 in total.
- The trainee is expected to be either a graduate student or a postdoc in bioinformatic or a related area who is fluent in English.
Cost and facility
The attendance fee is free. Lecturers and trainees are covered with travel expenses provided by their own country (China and Japan this time), lodging and meals by hosting country (Korea this time).
Abbreviations
- KOBIC : Korean Bioinformation Center
- CAS : Chinese Academy of Sciences
- SIBS : Shanghai Institutes for Biological Sciences, CAS
- FU : Fudan University
- SJTU : Shanghai Jiaotong University
- ICT : Institute of Computing Technology, CAS
- NIG : National Institute of Genetics
- OU : Osaka University
- TMU : Tokyo Metropolitan University
- BIRC : Biomedicinal Information Research Center
- AIST : National Institute of Advanced Industrial Science and Technology
- KAIST : Korea Advanced Institute of Science and Technology
- POSTECH : Pohang University of Science and Technology
- SSU : Soongsil University
Program
Ocean Suites Hotel map
Registration
May 10th, 2011 (Tue)| Time | Topic | Place |
|---|---|---|
| 17:00-18:00 | Registration | Lobby (1st floor) |
| 18:00- | Welcome reception (buffet dinner) | Canola hall |
Training Course
May 11th, 2011 (Wed)| Time | Topic | Lecturers | Place |
|---|---|---|---|
| -09:00 | Breakfast - Ramada: Tammopra(1F)/The Blue(2F) - Ocean Suites: Blue Ocean(2F) |
||
| 09:00-10:30 | A systems bioinformatic approach for identifying key regulators and their associated pathways  |
Daehee Hwang | Camelia Hall |
| 10:30-10:40 | Break | ||
| 10:40-12:10 | Microbial data analysis: towards systems approach |
Yixiang Shi | Camelia Hall |
| 12:10-13:30 | Lunch: Blue Ocean | ||
| 13:30-14:50 | Network Biology and Systems Genetics |
Insuk Lee | Camelia Hall |
| 15:00-16:20 | Introduction to evolutionary and comparative genomics |
Takashi Gojobori | Camelia Hall |
| 16:20-16:30 | Break | ||
| 16:30-18:00 | Fundamentals of molecular population genetics |
Yoshio Tateno | Camelia Hall |
| 18:00- | - 10th Anniversary Ceremony: Camelia Hall - Poster presentation(with standing dinner): Azalea Hall |
||
May 12th, 2011 (Thu)
| Time | Topic | Lecturers | Place |
|---|---|---|---|
| -08:40 | Breakfast - Ramada: Tammopra(1F)/The Blue(2F) - Ocean Suites: Blue Ocean(2F) |
||
| 08:40-10:10 | Gene prediction methods and algorithms |
Chaochun Wei | Camelia Hall |
| 10:10-10:20 | Break | ||
| 10:20-11:50 | Development in Sequencing Technologies and Their Applications |
Xuan Li | Camelia Hall |
| 11:50-13:00 | Lunch: Blue Ocean | ||
| 13:00-14:30 | Way of handling of large scale data by NGS |
Kazuho Ikeo | Camelia Hall |
| 14:30-14:40 | Break | ||
| 14:40-16:00 | Next generation sequencing for epigenetics studies |
Jung Kyoon Choi | Camelia Hall |
| 16:00- | Free time | ||
Bioinformatics Symposium
May 13th, 2011 (Fri)| Time | Topic | Lecturers | Chair | Place |
|---|---|---|---|---|
| -09:00 | Breakfast - Ramada: Tammopra(1F)/The Blue(2F) - Ocean Suites: Blue Ocean(2F) |
|||
| 09:00-09:40 | The intermediate-size noncoding RNA | Runsheng Chen | Xuan Li | Camelia Hall |
| 09:40-10:20 | Genomic studies of microbes | Guoping Zhao | ||
| 10:20-11:10 | Phosphorylation as the booster in vertebrate evolution | Yoshio Tateno | ||
| 11:00-11:10 | Break | |||
| 11:10-11:50 | Transcriptional influence of single amino acids of histones | Jung kyoon Choi | Dongsup Kim | Camelia Hall |
| 11:50-12:30 | Gene-set analysis of genome-wide association studies | Sangsoo Kim | ||
| 12:30-14:00 | Lunch: Blue Ocean | |||
| 14:00-14:40 | Transcriptome analysis by using large scale sequencing | Kazuho Ikeo | Yoshio Tateno | Camelia Hall |
| 14:40-15:20 | Evolution of animal duplogs | Naruya Saitou | ||
| 15:20-15:40 | Break | |||
| 15:40-16:20 | Gene module based meta-analysis of transcriptome | Xuan Li | Sangsoo Kim | Camelia Hall |
| 16:20-17:00 | Network bioinformatics for personalized healthcare | Doheon Lee | ||
| 17:00-17:40 | A high dimensional NGS Study on non-small-cell lung cancer (NSCLC) adenocarcinoma | Sanghyuk Lee | ||
| 17:40- | - Closing Ceremony - Banquet |
Canola Hall | ||
Poster
Poster presentation (Trainees)
- All trainees should present their posters
- The size of the poster board is 1m (width) x 2.1m (height)
- We recommend to leave 20mm space on each side and design the poster within the maximum dimensions of 0.9m (width) x 1.2m (height)
- Poster pins/tape will be provided
- Poster mounting: May 11, 9:00-13:00
- Poster removal: May 12 by 18:00
- Poster presentation: May 11, 18:00 ~ 20:00 (at the Ocean Suites hotel)
List of posters
| No. | Name | Alliliation | Poster title |
|---|---|---|---|
| K10 | Kwoneel Kim | KRIBB | GENT: Gene Expression Database of Normal and Tumor Tissues |
| K11 | Eiru Kim | Yonsei University | Assessment of effectiveness of the network-guided genetic screen |
| K12 | Yun-Gil Roh | Dong-A University | Analysis of CpG island methylation of BORIS and lack of association with lung cancer |
| K13 | Hyosil Kim | Ajou Universit | Nephrotoxicity risk assessment using meta-analysis |
| K14 | Yuno Lee | Gyeongsang National University | Alternative Approach for Flexible Protein-Protein Docking Calculation through Molecular Modeling Studies |
| K15 | Chan-Seok Jeong | KAIST | Reliable and robust detection of coevolving sites by using sequence profile |
| K16 | Hyun Woo Cho | Ajou University | Integrative analysis of transcriptome sequences in hepatocellular carcinoma |
| K17 | Youn-Jae Kim | KAIST | Lung cancer brain metastasis-specific mutations identified by exome sequencing |
| K18 | Seung Gu Park | Kangwon National University | Functional profiling of microRNAs through bioinformatics approach |
| K19 | Hee Jung Koo | POSTECH | Network Dynamics in Red Blood Cell Aging |
| C20 | Shuang Yang | Harbin Medical University | Linking diseases into network via pathway analysis |
| C21 | Jingran Wen | Shanghai Center for Bioinformation Technology | Biomedical informatics in cancer clinical practice- A short introduction of the work on biomedical data mining |
| C22 | Lingyao Zeng | Tongji University | Prediction of HCC metastasis based on gene regulatory modules |
| C23 | Yi Sun | Tongji University | Prediction of HCC metastasis based on gene regulatory modules |
| C24 | Juan Liang | Shanghai Jiaotong University | Featuring Protein S-Nitrosylation in Bioinformatics and Computational Chemistry |
| C25 | Jie Ping | Shanghai Jiaotong University | A meta-analysis of tissue gene expression data from high-throughput studies |
| C26 | Chinese Academy of Sciences | IGEPROS: An integrated gene and protein server | |
| C27 | Rudong Li | Chinese Academy of Sciences | An improved approach of modeling metabolism |
| C28 | Lei Zhang | Chinese Academy of Sciences | A brief self-introduction of research interest |
| C29 | Liming Xuan | East China University of Science and Technology | NeSSM: Next-generation-Sequencing Simulator for Metagenomics |
| J31 | Yuta Matsuda | University of Tokyo | Molecular Evolution of Tyrosine Hydroxylase and Tryptophan Hydroxylase |
| J32 | Ryoichi Minai | Shizuoka University | Development of a structural alignment tool for protein local surfaces |
| J33 | Kenji Fukushima | National Institute for Basic Biology | The recurrent co-option in the evolution of digestive enzymes of carnivorous plants |
| J34 | Mieko Kono | Graduate University for Advanced Studies | Searching for genetic basis of symbiosis in lichens |
| J35 | Tasuku Ito | University of Tokyo | Epigenomic analysis using single-base-resolution methylome |
| J36 | Haruka Ozaki | University of Tokyo | Stratification of transcription factor binding sites identified by ChIP-Seq using RNA-Seq data |
| J37 | Hiroaki Iwata | Kyoto University | Evaluation of Spliced Alignment Programs Including an Extended Version of Spaln |
| J38 | MingYin Ngai | National Institute of Genetics | Microsatellite Slippage conservation across primate species and their modern individuals |
| J39 | Yang An | Kyoto University | The Dugesia japonica Planarian Genome Project: Illustration of Planarian Genome and Regeneration Gene Network |
| J40 | Saaya L. Tsutsue | University of Tokyo | Inter-genomic distribution and dynamics of DNA sulfur modification gene and type IV restriction endonuclease |
Lecturers
Korea
- Dr. Sanghyuk Lee, Korean Bioinformation Center (symposium)
- Dr. Daehee Hwang, Pohang University of Science and Technology (POSTECH) (training course)
- Dr. Sangsoo Kim, Soongsil University (symposium)
- Dr. Jung Kyoon Choi, Korea Advanced Institute of Science and Technology (training course/symposium)
- Dr. Doheon Lee, Korea Advanced Institute of Science and Technology (symposium)
- Dr. Insuk Lee, Yonsei University (training course)
China
- Dr. Xuan Li, Shanghai Institute for Plant Physiology and Ecology, Chinese Academy of Sciences (training course/ symposium)
- Dr. Chaochun Wei, Shanghai Jiaotong University (training course)
- Dr. Yixiang Shi, Shanghai Center for Bioinformation Technology (training course)
- Dr. Guoping Zhao, The National Human Genome Center in Shanghai (symposium)
- Dr. Runsheng Chen, Institute of Biophysics, Chinese Academy of Sciences (symposium)
Japan
- Dr. Yoshio Tateno, National Institute of Genetics (training course/symposium)
- Dr. Takashi Gojobori, National Institute of Genetics (training course)
- Dr. Kazuho Ikeo, National Institute of Genetics (training course/symposium)
- Dr. Naruya Saitou, National Institute of Genetics (symposium)
Travel Information
Direction to accomodation for speakers (Ramada Plaza Hotel) and for trainees (Ocean Suites Hotel)
From Jeju International Airport
Toward Yongmoon Rotary → Hancheon Bridge → Seomoon Market → Turn left at the Market intersection → Go Straight toward Tapdong-Ro (distance: 3.8Km / taxi fare: approx. 3,500 won / about 10 minutes' ride)
From Jeju International Ferry Terminal
Turn left at Imhang-Ro → Drive toward Yongdooam/Tapdong (distance: 2.2km / taxi fare approx. 2,500 won/ 6 minutes' ride)
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