April 20-23, 2010 The 9th CJK Bioinformatics Training Course and Symposium, Shanghai, ChinaOriginal website: http://cjk-bioinfo-09.scbit.org
Announcement
We are pleased to announce that “The 9th China-Japan-Korea Bioinformatics Training Course and Bioinformatics Symposium” will be held at Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences(CAS), Shanghai, China, from April 20th to April 23rd, 2010.
Outline
Venue
Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 319 Yueyang Road, Shanghai，China
- Training Course: Computer Room 2 (307-308), Zhongke Building
- Bioinformatics Symposium: Classroom 1 (203-204), Zhongke Building
Period
- Training Course: April 20-22, 2010 (3 days)
- Bioinformatics Symposium: April 23, 2010
Organizers
Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences（SIBS)Shanghai Center for Bioinformation Technology (SCBIT)
Japan Science and Technology Agency (JST)
Center for Information Biology and DDBJ (CIB-DDBJ) at the National Institute of Genetics (NIG)
Korean BioInformation Center (KOBIC) at the Korea Research Institute of Bioscience and Biotechnology (KRIBB)
Trainees
- Ten trainees from each of the three countries, 30 in total.
- The trainee is expected to be either a graduate student or a postdoc in bioinformatics or a related area who is fluent in English.
Fees
The attendance fee is free. Moreover, the trainees are covered with travel expenses, lodging and meals. He/She is also provided with a PC linked with Internet during the course.
Notes
CAS: Chinese Academy of SciencesSIBS: Shanghai Institutes for Biological Sciences, CAS
FU: Fudan University
SJTU: Shanghai Jiaotong University
ICT: Institute of Computing Technology, CAS
NIG: National Institute of Genetics
OU: Osaka University
TMU: Tokyo Metropolitan University
BIRC: Biomedicinal Information Research Center
AIST : National Institute of Advanced Industrial Science and Technology
KOBIC: Korean Bioinformation Center
KAIST: Korea Advanced Institute of Science and Technology
POSTECH: Pohang University of Science and Technology
SSU: Soongsil University
Lecturers
| China | ||
| Dr. Yixue Li | Shanghai Institutes for Biological Sciences, CAS | symposium |
| Dr. Yang Zhong | Fudan University | symposium |
| Dr. Luonan Chen | Shanghai Institutes for Biological Sciences, CAS | training course, symposium |
| Dr. Aiping Lv | Shanghai Institutes for Biological Sciences, CAS | training course |
| Dr. Hongbin Shen | Shanghai Jiaotong University | symposium |
| Dr. Xuan Li | Shanghai Institutes for Biological Sciences, CAS | training course |
| Dr. Chaochun Wei | Shanghai Jiaotong University | training course |
| Dr. Yan Fu | Institute of Computing Technology, CAS | training course |
| Japan | ||
| Dr. Takashi Gojobori | National Institute of Genetics | symposium |
| Dr. Yoshio Tateno | National Institute of Genetics | symposium |
| Dr. Haruki Nakamura | Osaka University | training course |
| Dr. Koichiro Tamura | Tokyo Metropolitan University | training course, symposium |
| Dr. Tadashi Imanishi | Biomedicinal Information Research Center, AIST | training course, symposium |
| Dr. Saitou Naruya | National Institute of Genetics | training course |
| Korea | ||
| Dr. Sanghyuk Lee | Korean Bioinformation Center | training course, symposium |
| Dr. Dongsup Kim | Korea Advanced Institute of Science and Technology | training course, symposium |
| Dr. Daehee Hwang | Pohang University of Science and Technology (POSTECH) | training course, symposium |
| Dr. Sangsoo Kim | Soongsil University | training course, symposium |
Program
| Time | Topic | Address |
|---|---|---|
| Registration: Monday, April 19th, 2010 | ||
| 13:00-18:30 | Check in | Lecturers: Hope Hotel, 500 Zhaojiabang Road Trainees: Zhongke Building, 319 Yueyang Road |
| 18:30- | Welcome reception (buffet) | Floor3, 500 Zhaojiabang Road, Hope Hotel, Ban Dao buffet |
| Training Course Day 1: Tuesday, April 20th, 2010 | ||
| 07:30-08:45 | Breakfast | Hope Hotel, 500 Zhaojiabang Road |
| 09:00-10:30 | Lecture01: Predicting Biomolecular Interactions by Integrating Multiple Data Sources Luonan Chen (SIBS, China) |
Computer Room 2 (307-308), Zhongke Building |
| 10:30-10:45 | Break | Lecturers: VIP room |
| 10:45-12:15 | Lecture 02: Evolutionary Genomics Saitou Naruya (NIG, Japan) |
Computer Room 2 (307-308), Zhongke Building |
| 12:15-14:00 | Lunch | Shenji Soup Restaurant, Sheng Ai Building, Fl.2, No.88, North Caoxi Rd. (by Shuttle Bus |
| 14:00-15:00 | Lecture 03: Methods and Algorithms for Gene Prediction Chaochun Wei (SJTU, China) |
Computer Room 2 (307-308), Zhongke Building |
| 15:00-16:00 | Lecture 04: Molecular Phylogenetic Analyses using MEGA4 Koichiro Tamura (TMU, Japan) |
Computer Room 2 (307-308), Zhongke Building |
| 16:00-16:15 | Break | Lecturers: VIP room |
| 16:15-17:15 | Lecture 05: Towards biological interpretation of omics data: gene set analysis Sanghyuk Lee (KOBIC, Korea) |
Computer Room 2 (307-308), Zhongke Building |
| 17:30-18:30 | Dinner | Haoxianglai Restaurant, 565 Zhaojiabang Rd. (5 minutes' walk) |
| Training Course Day 2: Wednesday, April 21st, 2010 | ||
| 07:30-08:45 | Breakfast | Fl. 3, 500 Zhaojiabang Road, Ban Dao buffet, Hope Hotel |
| 09:00-10:30 | Lecture 06: Structural Bioinformatics: Databases and Analyses Haruki Nakamura (OU, Japan) |
Computer Room 2 (307-308), Zhongke Building |
| 10:30-10:45 | Break | Lecturers: VIP room |
| 10:45-12:15 | Lecture 07: Structural Bioinformatics Dongsup Kim (KAIST, Korea) |
Computer Room 2 (307-308), Zhongke Building |
| 12:15-14:00 | Lunch | Shenji Soup Restaurant, Sheng Ai Building, Fl.2, No.88, North Caoxi Rd. (by Shuttle Bus) |
| 14:00-15:00 | Lecture 08: Genome-wide Association Study (GWAS) Sangsoo Kim (SSU, Korea) |
Computer Room 2 (307-308), Zhongke Building |
| 15:00-16:00 | Lecture 09: Using Databases in Bioinformatics Tadashi Imanishi (BIRC, AIST, Japan) |
Computer Room 2 (307-308), Zhongke Building |
| 16:00-16:15 | Break | Lecturers: VIP room |
| 16:15-17:15 | Lecture 10: New Development in Sequencing Technologies and Their Applications Xuan Li (SIBS, China) |
Computer Room 2 (307-308), Zhongke Building |
| 17:30-18:30 | Dinner | Haoxianglai Restaurant, 565 Zhaojiabang Rd. (5 minutes' walk) |
| Training Course Day 3: Thursday, April 22nd, 2010 | ||
| 07:30-08:45 | Breakfast | Fl. 3, 500 Zhaojiabang Road, Ban Dao buffet, Hope Hotel |
| 09:00-10:30 | Lecture 11: Bioinformatics for Proteomic Research Daehee Hwang (POSTECH, Korea) |
Computer Room 2 (307-308), Zhongke Building |
| 10:30-10:45 | Break | Lecturers: VIP room |
| 10:45-11:45 | Lecture 12: Mass spectrometry Proteomics Bioinformatics Aiping Lv (SIBS, China) |
Computer Room 2 (307-308), Zhongke Building |
| 11:45-12:15 | Lecture 13: Introduction of Proteomics Software: pFind Yan Fu(ICT,China) |
Computer Room 2 (307-308), Zhongke Building |
| 12:15-14:15 | Lunch & Closing Ceremony | Fl.5, No.100, Rd. Qinzhou, Shanghai Technology Innovation Center |
| Bioinformatics Symposium: Friday, April 23rd, 2010 | ||
| 07:30-08:45 | Breakfast | Fl. 3, 500 Zhaojiabang Road, Ban Dao buffet, Hope Hotel |
| Chair: Yixue Li (SIBS, China) | ||
| 09:00-09:30 | The Studies of Genome Network as the basis of Systems Biology Takashi Gojobori (NIG, Japan) |
Classroom 1 (203-204), Zhongke Building |
| 09:30-10:00 | Sanghyuk Lee (KOBIC, Korea) | |
| 10:00-10:30 | Protein Structure and Function Prediction Hongbin Shen (SJTU, China) |
|
| 10:30-10:45 | Break | |
| 10:45-11:15 | Yoshio Tateno (NIG, Japan) | |
| 11:15-11:45 | From Bioinformatics to Systems Biology: Case Studies Yang Zhong (FU, China) |
|
| 11:45-12:15 | Sangsoo Kim (SSU, Korea) | |
| 12:15-14:00 | Lunch | Haoxianglai Restaurant, 565 Zhaojiabang Rd. (5 minutes' walk) |
| Chair: Takashi Gojobori (NIG, Japan) | ||
| 14:00-14:30 | Identification of Causative Variations Yixue Li (SIBS, China) |
Classroom 1 (203-204), Zhongke Building |
| 14:30-15:00 | Koichiro Tamura (TMU, Japan) | |
| 15:00-15:30 | Daehee Hwang (POSTECH, Korea) | |
| 15:30-15:45 | Break | |
| 15:45-16:15 | Towards network-based computational biology Luonan Chen (SIBS, China) |
|
| 16:15-16:45 | Dongsup Kim (KAIST, Korea) | |
| 16:45-17:15 | Tadashi Imanishi (BIRC, AIST, Japan) | |
| 18:00-20:00 | Dinner | Lecturers: Qiupnig Tea Restaurant, 500 South Xiangyang Rd. |
| 20:00-22:00 | Discussion | Coffee bar |
| Departure: Saturday, April 24th, 2010 | ||
| Hotel check-out | ||
Travel Information
Map
B: Zhongke Building，319 Yueyang Rd, Shanghai
Traffic
From Hong Qiao Airport:
Option 1: Bus No. 806 to Fenglin Road, then cross the bridge going northOption 2: Take a taxi at the official TAXI stand (within 55 RMB)
From Pu Dong Airport:
Option 1: Airport Line Bus No. 3 to Wanping Road(S), then transfer to Fengling Road by Bus No. 43, 205 or 985Option 2: Take a taxi at the official TAXI stand (140 to 160 RMB)
From Line 1 Metro Station:
20 minutes' walk after getting down at Hengshan Road StopFrom Line 7 or Line9 Metro Station:
15 minutes' walk after getting down at Zhaojiabang Road StopPublic Buses:
Bus No. 42, 43, 49, 205, 218, 806, 927 or 931 to Fengling Road