Original website: http://www.saitou-naruya-laboratory.org/meetings/EvolutionaryBioinformatics_Aug0015.html
- Call for participation
- List of invited speakers
- List of selected young speakers
- List of poster presenters
- Program
Venue: OIST Sea Side House, Okinawa, Japan
Financially supported by
- National Institute of Genetics (NIG), Mishima, Japan
- Okinawa Institute of Science and Technology (OIST), Okinawa, Japan
- The Motoo Kimura Trust Foundation for the Promotion of Evolutionary Biology, Japan
Call for participation of young investigators (closed)
- We expect young investigators from Korea, China, Japan, and other East Asian countries to attend this symposium.
- There is no clear definition about "young investigator". Graduate students, post-docs, junior faculties are our main expectations. However, if you think you are young, it is OK!
- There is no registration fee for this symposium.
- Participants should cover one's travel expense (air flights, trains, bus, etc.) between one's place and meeting venue, namely, OIST Sea Side House.
- Organizing committee will provide free two-night stay (Aug 10-11) at OIST Sea Side House for all young investigators who will attend this symposium. This includes free meals as follows: dinner on Aug 10, breakfast, lunch, and dinner on Aug 11, and breakfast and lunch on Aug 12.
- There is no registration fee for this symposium. Organizing committee will provide free two-night stay (Aug 10-11) at OIST Sea Side House for all young investigators who will attend this symposium.
- All young investigators are expected to present posters.
- Organizing committee will choose some young investigators to give short oral talks during this symposium.
- All talks and discussions will be in English.
How to apply to this symposium
Young investigators in China should contact Dr. Xie Lu (xielu@scbit.org) at SCBIT.Young investigators in Korea should contact Dr. Hwang Seungwoo (swhwang@kribb.re.kr) at KOBIC.
Young investigators in Japan and other East Asian countries should contact Dr. Saitou Naruya (saitounr@nig.ac.jp) at NIG.
Around 10 young investigators from each country will be able to attend this symposium.
List of invited speakers
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Professor, Division of Evolutionary Genetics, National Institute of Genetics (NIG), Japan | Inferring ancestral DNA sequences under non-stationary models: Methodology and applications |
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Professor, Institute of Biophysics, Chinese Academy of Sciences, China | Noncoding sequence and precision medicine |
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Distinguished Professor, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Saudi Arabia, and Project Professor, National Institute of Genetics (NIG), Japan | Comparative metagenomics: diversities of marine microorganisms between Japan and Saudi Arabia |
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Associate Professor, Laboratory for DNA Data Analysis, National Institute of Genetics (NIG), Japan | Platform for drug discovery from genome sequence to protein structure |
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Professor, Division of Human Genetics, National Institute of Genetics (NIG), Japan | Is "thrifty genotype hypothesis" by Neel still valid? |
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Assistant Professor, Konkuk University, Korea | Ancestral genome reconstruction |
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Director, Korean Bioinformation Center (KOBIC), Korea | Building infrastructure for Korean bioresource information management and cloud-based omics data analysis platform |
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Professor, Soongsil University, Korea | Predicting the splicing quantitative trait loci |
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Professor, Pohang University of Sciecen and Technology (POSTECH), Korea | Network analysis to understand the process of metazoan evolution |
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Professor, Institute of Biochemistry and Cell Biology, Shanghai Institutes of Biological Sciences (SIBS), Chinese Academy of Sciences, China | Data mining: driven by functional studies for biology |
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Professor, Genome Informatics Laboratory, National Institute of Genetics (NIG), Japan | Towards better genome annotation |
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Professor, Division of Population Genetics, National Institute of Genetics (NIG), Japan | Diversity of conserved noncoding sequence evolution among eukaryotes |
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Professor, Marine Genomics Unit, Okinawa Institute of Science and Technology (OIST), Japan | Horitzontal gene transfer, when and how: a case study of tunicates |
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Molecular Genomics Unit, Okinawa Institute of Science and Technology (OIST), Japan | Dynamics of genome architecture evolution across metazoans |
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Okinawa Institute of Science and Technology (OIST), Japan | This is not relevant |
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Professor and Vice Director, Shanghai Center for Bioinformation Technology (SCBIT), China | Identification of protein variants influencing protein abundance levels in breast cancer |
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Professor, Institute of Plant Physiology and Ecology, Shanghai Institutes of Biological Sciences (SIBS), Chinese Academy of Sciences, China | Big BioData vs Small BioCuration |
List of selected young speakers
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Graduate student, Pohang University of Science and Technology, Pohang, Korea | The change of Genotype-Phenotype relationship can be explained by rewiring of functional module |
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Associate Professor, The University of Ryukyu Medical School, Okinawa, Japan | A search for genetic variants associated with 3D facial morphology in Japanese |
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Associate Professor, Jilin University, Jilin, China | Multi-scale RNA comparison |
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Graduate student, Hanyang University, Seoul, Korea | Structural variants from whole genome sequencing of Korean population |
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Graduate student, Seoul National University, Seoul, Korea | Targeted sequencing using pooled DNA samples to maximize variant discovery power for alzheimer disease susceptibility prediction |
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Assistant Professor, Shanghai Jiaotong University, Shanghai, China | The building blocks of the genome 3D structure |
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Associate Professor, Faculty of Agriculture, Miyazaki University, Miyazaki, Japan | Systematics of "Harveyi clade" bacteria (family Vibrionaceae), using evolutionary bioinformatics |
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Assistant Professor, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China | Whole genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia |
List of poster presenters
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Researcher, Korean Bioinformation Center, Korea | Non-tuberculous mycobacteria classification system based on multiple marker genes |
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Associate Professor, Seoul National University, Korea | Business Insight on Bioinformatics |
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Graduate student, SOKENDAI (Graduate University for Advanced Studies) / National Institute of Genetics (NIG), Japan | Simulating pathogen molecular evolution in epidemics: a graph approach |
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Graduate student, Seoul National University, Korea | Deciphering clonal evolution in a hematopoietic tumor model |
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Asistant Professor, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China | Relationship estimation from whole-genome sequence data |
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Graduate Student, Institute of Computing Technology, Chinese Academy of Sciences, China | pTop: improving the searching efficienty for intact protein indentification |
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Student, College of Life Science and Technology, Huazhong University of Science and Technology, China | MiCroTiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle |
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Graduate student, SOKENDAI (Graduate University for Advanced Studies) / National Institute of Genetics (NIG), Japan | Lineage-specific genome evolution in Drosophila melanogaster subgroup |
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Graduate student, Hanyang University, Korea | Whole genome based variation analysis study in 62 Koreans |
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Assistant Professor, Shanghai Center for Bioinformation Technology, China | Detecting robust DEGs based on gene expression categories |
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Graduate student, SOKENDAI (Graduate University for Advanced Studies) / National Institute of Genetics (NIG), Japan | Genetic diversity of Kazakhstan camel population and its evolutionary relationship with the Arabian camel breed |
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Graduate student, Ulsan National Institute of Science and Technology, Korea | Comparative genomic study on Myotis formosus |
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Associate Professor, Jilin University, China | Essential protein identification based on essential protein-protein interaction prediction by integrated edge weights |
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Graduate student, Ulsan National Institute of Science and Technology, Korea | Comparative genomics for aging genes between bowhead and minke whales |
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Graduate student, Seoul National University, Korea | Understanding phenotypic subdivision using a non-conventional model species |
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Graduate student, Kyushu University Graduate School of Systems Life Sciences, Fukuoka, Japan | Characterizing polymorphism in sugar taste sensitivity in a natural population of Drosophila melanogaster |
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Faculty of Agriculture, Miyazaki University, Miyazaki, Japan | Systematics of "Harveyi clade" bacteria (family Vibrionaceae), using evolutionary bioinformatics |
Program
Symposium will be held at Seminar room of OIST Seaside House 1st floor.
Talk time for invited speakers is 35 min. including questions and discussions.
Talk time for selected young investigators is 20 min. including questions and discussions.
Posters will be put at OIST Seaside House first floor. Size of poster is W880mm X H1,170mm.
Invited speakers will stay at Costa Vista Okinawa Hotel & Spa, and young attendants will stay at OIST Seaside House.
Day 1: Monday, August 10, 2015 | ||
13:00-13:30 | Registration & Poster preparation | |
13:30-13:40 | Introduction | Saitou Naruya (NIG) & Satoh Noriyuki (OIST) |
13:40-14:15 | Invited Talk 1: Noncoding sequence and precision medicine | Chen Runsheng, China |
14:15-14:50 | Invited Talk 2: Network analysis to understand the process of metazoan evolution | Kim Sanguk, Korea |
14:50-15:25 | Invited Talk 3: Horitzontal gene transfer, when and how: a case study of tunicates | Satoh Noriyuki, OIST, Japan |
15:25-16:00 | Invited Talk 4: Big BioData vs Small BioCuration | Zhao Guoping, China |
16:00-16:30 | Tea Break | |
16:30-17:05 | Invited Talk 5: Predicting the splicing quantitative trait loci | Kim Sangsoo, Korea |
17:05-17:40 | Invited Talk 6: Comparative metagenomics: diversities of marine microorganisms between Japan and Saudi Arabia | Gojobori Takashi, KAUST/NIG, Japan |
17:40-18:15 | Invited Talk 7: Data mining: driven by functional studies for biology | Li Yixue, China |
18:15-18:50 | Invited Talk 8: Building infrastructure for Korean bioresource information management and cloud-based omics data analysis platform | Kim Ryan Woonbong, Korea |
19:00-20:00 | Dinner at Seaside House | |
20:00-21:00 | Poster Presentation 1 | |
Day 2: Tuesday, August 11, 2015 | ||
09:00-9:20 | Selected Short Talk 1: A search for genetic variants associated with 3D facial morphology in Japanese | Kimura Ryosuke, Japan |
09:20-9:40 | Selected Short Talk 2: Structural variants from whole genome sequencing of Korean population | Park Young Chan, Korea |
09:40-10:00 | Selected Short Talk 3: Whole genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia | Wang Zhen, China |
10:00-10:35 | Invited Talk 9: Towards better genome annotation | Nakamura Yasukazu, NIG, Japan |
10:35-11:10 | Invited Talk 10: Dynamics of genome architecture evolution across metazoans | Oleg Simakov, OIST, Japan |
11:10-11:45 | Invited Talk 11: Identification of protein variants influencing protein abundance levels in breast cancer | Xie Lu, China |
11:45-14:00 | Lunch | |
14:00-14:35 | Invited Talk 12: Is "thrifty genotype hypothesis" by Neel still valid? | Inoue Ituro, NIG, Japan |
14:35-15:10 | Invited Talk 13: Inferring ancestral DNA sequences under non-stationary models: Methodology and applications | Akashi Hiroshi, NIG, Japan |
15:10-15:45 | Invited Talk 14: Ancestral genome reconstruction | Kim Jaebum, Korea |
15:45-16:20 | Invited Talk 15: This is not relevant | Robert Sinclair, OIST, Japan |
16:20-16:40 | Tea Break | |
16:40-18:30 | Poster Presenation 2 | |
18:30-19:00 | Move to hotel | |
19:00-21:00 | Banquet at Kafuu Resort Fuchaku Hotel | |
Day 3: Wednesday, August 12, 2015 | ||
09:00-9:20 | Selected Short Talk 4: Systematics of "Harveyi clade" bacteria (family Vibrionaceae), using evolutionary bioinformatics | Urbanczyk Henryk, Japan |
09:20-9:40 | Selected Short Talk 5: The change of Genotype-Phenotype relationship can be explained by rewiring of functional module | Kim DongHyo, Korea |
09:40-10:00 | Selected Short Talk 6: The building blocks of the genome 3D structure | Shi Yi, China |
10:00-10:20 | Selected Short Talk 7: Targeted sequencing using pooled DNA samples to maximize variant discovery power for Alzheimer's disease susceptibility prediction | Seo Ji Eun, Korea |
10:20-10:40 | Selected Short Talk 8: Multi-scale RNA comparison | Li Ying, China |
10:40-11:05 | Invited Talk 16: Platform for drug discovery from genome sequence to protein structure | Ikeo Kazuho, NIG, Japan |
11:05-11:40 | Invited Talk 17: Diversity of conserved noncoding sequence evolution among eukaryotes | Saitou Naruya, NIG, Japan |
11:50-14:00 | Lunch & closing ceremony | |
14:00-15:00 | Removal of posters | |
15:00-16:00 | Visit to OIST (optional) |
Organizing committee
Gojobori Takashi, Distinguished Professor, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Saudi ArabiaIkeo Kazuho, Associate Professor, Laboratory for DNA Data Analysis, National Institute of Genetics (NIG), Japan
Saitou Naruya, Professor, Division of Population Genetics, National Institute of Genetics (NIG), Japan (Chair)
Satoh Noriyuki, Professor, Okinawa Institute of Science and Technology (OIST), Japan
All informations are updated on August 11th, 2015.