Program book (as of 2019/08/14, version 3.0): 
The Asian Bioinformatics Consortium (ABC) Symosium (formerly known as the China-Japan-Korea Bioinformatics Training Course or Symposium) started in 2002, which aims at promoting bioinformatics research activity in the three Asian countries through scientific exchange, training future talents and exploring new translational biomedical strategies to improve human health.
General Information
History
Schedule
| Registration | August 21st, 2019 |
| Symposium | August 22nd to 23rd, 2019 |
| Departure | August 24th, 2019 |
Venue
Gui'an New Area, Guiyang, Guizhou Province
Local Organizers and Sponsors
- Shanghai Institute of Nutrition and Health (SINH), CAS
- Bio-Med Big Data Center, SINH, CAS
- Guizhou Science and Technology Information Center
- Guizhou Normal University
- Shanghai Center for Bioinformation Technology
- Shanghai Society for Bioinformatics
- Gui An Bio-Med Big Data Center, SIBS, CAS
Attendants
- One keynote speaker and nine speakers from each country, 30 in total.
- A keynote speaker from each country will give 35-min presentation.
- Remaining nine speakers from each country will give 20-min presentation.
Meeting Place
Conference Center, Guizhou Normal University (Hua Xi Campus)Accommodation
- Hotel name and adress (in English)
- Hotel name and address (in Chinese)
- Tel: +86-0851-83962888 // Web: Agoda.com link
Cost and Facility
The attendance fee is free. Speakers should cover their own travel expenses.Three days' lodging will be provided by Bio-Med Big Data Center of Shanghai Institute of Nutrition and Health of CAS including August 21st, 22nd, 23rd.
Invited Speakers
 China
|
||
| Chen Runsheng | Professor, Institute of Biophysics, CAS | Noncoding sequences of genome and non coding RNAs |
| Zhao Guoping | Institute of Plant Physiology and Ecology, CAS | Strive for international collaboration on the challenge of bio-medical data: From genomics and through biomes |
| Li Yixue | Professor, CAS-PMG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, CAS | / |
| Xie Lu | Professor, Shanghai Center for Bioinformation Technology | Gene expression and proteome landscape of Chinese HCC reveals prognostic determinants and therapeutic targets |
| Wang Zefeng | Professor, CAS-PMG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, CAS | Increasing the human genome complexity at the RNA levels |
| Shen Tie | Associate Professor, Guizhou Normal University | Fluxomics: Big data for synthetic biology |
| Lv Hui | Professor, Shanghai Jiao Tong University | Joint analysis framework for multiomics and multidisease data |
| Wei Chaochun | Professor, Shanghai Jiao Tong University | HUPAN: a human pan-genome analysis pipeline |
| Shi Tieliu | Professor, East China Normal University | Deep learning-based multi-omics data integration reveals two prognostic subtypes in high-risk neuroblastoma |
| Wang Sijia | Professor, CAS-PMG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, CAS | Human physical traits and the phenome research |
| Liu Qi | Professor, Tongji University | Initi-IO: An integrative and intelligentized immuno-oncology study platform |
 Japan
|
||
| Gojobori Takashi | Professor, KAUST, Saudi Arabia & NIG | Digital health, AI, and biomedical genomics |
| Saitou Naruya | Professor, National Institute of Genetics | Introduction of Yaponesian Genome Project with special reference to modern human genome analyses |
| Yoko Satta | Professor, SOKENDAI Hayama | Detecting signals of positive selection by two dimensional site frequency spectrum (2DSFS): a case study of schizophrenia related SNPs |
| Nakamura Yasukazu | Professor, National Institute of Genetics | Chromosome-scale assemblies are coming back: DB updates and future plan |
| Inoue Ituro | Professor, National Institute of Genetics | Viruses in the planet |
| Tadashi Imanish | Professor, Okai University Medical School | Bioinformatics for the diagnosis of infectious diseases |
| Kosuke Hanada | Associate Professor, Kyushu Technology University | The origin and evolution of Japanese cultivated radishes |
| Masatoshi Matsunami | Assistant Professor, University of Ryukyus Medical School | A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology |
| Hideaki Kanzawa | Staff Scientist, National Museum of Science and Nature | History of Yaponesians inferred from ancient Yaponesian genome sequences |
| Kae Koganebuchi | Specially appointed assitant professor, University of Ryukyus Medical School | Demographic history of the Ryukyu Islanders inferred from whole-genome sequencing |
 Korea
|
||
| Kim Sanguk | Professor, Pohang University of Science and Technology | Evolution of functional modules and regulatory networks: Understanding genotype-phenotype relationship |
| Park Ji Hwan | Senior Researcher, Korean Bioinformation Center | Transcriptomic and proteomic approaches to identify regulatory NAC network of Arabidopsis leaf senescence |
| Choi Sun Shim | Professor, Kangwon National University | Functional relevance of first intron revealed by enrichment of epigenetic modification signals |
| Lee Younghee | Assitant Professor, University of Utah, Asia Campus | Alternative splicing and human diseases |
| Rhee Je-Keun | Assistant Professor, Pusan National University | Genomic and epigenomic data analysis using probabilistic evolutionary learning |
| Park Kiejung | Specially Employed Professor, Sangmyung University | Development of a prediction system for positively selected genes against massive orthologous groups |
| Choe Yong-Kyung | Professor, Institut Pasteur Korea | Institut Pasteur Korea: role and works |
| Choi Inhee | Senior Researcher, Institut Pasteur Korea | Identification of TB drug targets from NGS |
| Jeong Choongwon | Assistant Professor, Seoul National University | The genetic history of admixture across inner Eurasia |
| Seungwoo Hwang | Principal Investigator, Korean Bioinformation Center | (Poster presentation only) Genome-wide DNA methylation profile of Korean CLL patients |
Program
Talk time for keynote speakers is 35 min.Talk time for other speakers is 20 min.
| Registration: Wednesday, August 21st, 2019 Wan Yi Panorama Hotel |
||
| 13:00-18:00 | Registration at Wan Yi Panorama Hotel | |
| 18:30-20:00 | Welcome Reception at Wan Yi Panorama Hotel | |
| Day 1: Thursday, August 22nd, 2019 Conference Center, Guizhou Normal University (Hua Xi Campus) |
||
| 08:50-09:00 | Introduction | Li Yixue & Xie Lu |
| Session 1: Chaired by Wang Zefeng | ||
| 09:00-09:35 | Keynote Talk 1: Noncoding sequences of genome and non coding RNA |
Chen Runsheng Institute of Biophysics, CAS |
| 09:35-10:10 | Keynote Talk 2: Strive for international collaboration on the challenges of bio-medical data: From genomics and through biomes |
Zhao Guoping Institute of Plant Physiology and Ecology, CAS |
| 10:10-10:30 | Talk 1: Detecting signals of positive selection by two dimensional site frequency spectrum (2DSFS): a case study of schizophrenia related SNPs | Yoko Satta SOKENDAI Hayama |
| 10:30-10:50 | Talk 2: Joint analysis framework for multi-omics and multi-disease data | Lv Hui Shanghai Jiao Tong University |
| 10:50-11:10 | Talk 3: Institut Pasteur Korea: role and works | Choe Yong-Kyung Institut Pasteur Korea |
| 11:10-11:30 | Talk 4: Deep learning-based multi-omics data integration reveals two prognostic subtypes in high-risk neuroblastoma | Shi Tieliu East China Normal University |
| 11:50-13:00 | Lunch at Howard Johnson Qunsheng Plaza Guizhou | |
| 13:00-13:30 | Taking Group Picture & Posters Preparation | |
| Session 2: Chaired by Li Yixue | ||
| 13:35-14:10 | Keynote Talk 3: Health, AI, and Biomedical Genomics |
Gojobori Takashi KAUST, Saudi Arabia & NIG |
| 14:10-14:30 | Talk 5: Transcriptomic and proteomic approaches to identify regulatory NAC network of Arabidopsis leaf senescence | Park Ji Hwan Korean Bioinformation Center |
| 14:30-14:50 | Talk 6: Increasing the human genome complexity at the RNA levels | Wang Zefeng Shanghai Institute of Nutrition and Health, CAS |
| 14:50-15:10 | Talk 7: Alternative splicing and human diseases | Lee Younghee University of Utah, Asia Campus |
| 15:10-15:30 | Talk 8: A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology | Masatoshi Matsunami University of the Ryukyus Medical School |
| 15:30-16:00 | Tea Break | |
| Session 3: Chaired by Lv Hui | ||
| 16:00-16:20 | Talk 9: HUPAN: a human pan-genome analysis pipeline | Wei Chaochun Shanghai Jia Tong University |
| 16:20-16:40 | Talk 10: The genetic history of admixture across inner Eurasia | Jeong Choongwon Seoul National University |
| 16:40-17:00 | Talk 11: History of Yaponesians inferred from ancient Yaponesian genome sequences | Hideaki Kanzawa National Museum of Science and Nature |
| 17:00-17:20 | Talk 12: Development of a prediction system for positively selected genes against massive orthologous groups | Park Kiejunjg Sangmyung University |
| 17:20-17:40 | Talk 13: Demographic history of the Ryukyu islanders inferred from whole-genome sequencing | Kae Koganebuchi University of the Ryukyus Medical School |
| 18:40-20:10 | Dinner at Wan Yi Panorama Hotel, 6th Floor |
|
| 20:30-21:30 | Discussion Meeting about next year's Bioinformatics Symposium (invited speakers), Azalea Hall 8th Floor at Wan Yi Panorama Hotel | |
| Day 2: Friday, August 23rd, 2019 Conference Center, Ghuizhou Normal University (Hua Xi Campus) |
||
| Session 4: Chaired by Xie Lu | ||
| 08:55-09:35 | Keynote Talk 4: Evolution of functional modules and regulatory networks: Understanding genotype-phenotype relationship |
Kim Sanguk Pohang University of Science and Technology |
| 09:30-09:50 | Talk 14: Human physical traits and the phenome research | Wang Sijia Shanghai Institute of Nutrition and Health, CAS |
| 09:50-10:10 | Talk 15: Functional relevance of first intron revealed by enrichment of epigenetic modification signals | Choi Sun Shim Kangwon National University |
| 10:10-10:30 | Talk 16: Genomic and epigenomic data analysis using probabilistic evolutionary learning | Rhee Je-Keun Pusan National University |
| 10:30-10:50 | Talk 17: Viruses in the planet | Ituro Inoue National Institute of Genetics |
| 10:50-11:10 | Talk 18: The origin and evolution of Japanese cultivated radishes | Kosuke Hanada Kyushu Technology University |
| 11:30-12:50 | Lunch at Howard Johnson Qunsheng Plaza Guizhou | |
| 13:10-13:40 | Posters Presentation 2 | |
| Session 5: Chaired by Wang Sijia | ||
| 13:40-14:00 | Talk 19: Introduction of Yaponesian Genome Project with special reference to modern human genome analysis | Saitou Naruya National Institute of Genetics |
| 14:00-14:20 | Talk 20: Initi-IO: An integrative and intelligentized immuno-oncology study platform | Liu Qi Tongji University |
| 14:20-14:40 | Talk 21: Identification of TB drug targets from NGS | Choi Inhee Institut Pasteur Korea |
| 14:40-15:00 | Talk 22: Bioinformatics for the diagnosis of infectious diseases | Tadashi Imanishi Okai University Medical School |
| 15:00-15:20 | Tea Break | |
| 15:20-15:40 | Talk 23: Fluxomics: Big data for synthetic biology | Shen Tie Guizhou Normal University |
| 15:40-16:00 | Talk 24: Chromosome-scale assemblies are coming back: DB updates and future plan | Nakamura Yasukazu National Institute of Genetics |
| 16:00-16:20 | Talk 25: Gene expression and proteome landscape of Chinese HCC reveals prognostic determinants and therapeutic targets | Xie Lu Shanghai Center for Bioinformation Technology |
| 16:20-16:30 | Ending Remark | |
| 18:00-19:40 | Dinner at Wan Yi Panorama Hotel, 6th Floor. (If the participants have their own arrangement and do not need to take dinner in the hotel, please inform us in advance.) |
|
| Day 3: Saturday, August 24th, 2019 Wan Yi Panorama Hotel |
||
| 07:00-12:00 | Check out at hotel | |
Travelling Guidance
If someone need to go the the hotel by himself or herself, travelling by taxi is highly recommended than any other ways.
A single trip from Guiyang Longdongbao International Airport to Wan Yi Panorama Hotel takes 50 minutes and costs around 75 RMB.
Please contact Ms. HE Qinwen if you need any help during the travelling.
A shuttle bus will take all the participants to the conference center on 22nd and 23rd morning and take everyone back to the hotel after the symposium.
The conference cneter is located in the blue circle.
Shuttle Bus
| Date | Departure Time | Start | Terminal |
| August 22nd | 08:00 | Wan Yi Panorama Hotel | Conference Center in Guizhou Normal University (Hua Xi Campus) |
| August 22nd | 18:00 | Conference Center in Guizhou Normal University (Hua Xi Campus) | Wan Yi Panorama Hotel |
| August 23rd | 08:10 | Wan Yi Panorama Hotel | Conference Center in Guizhou Normal University (Hua Xi Campus) |
| August 23rd | 16:45 | Conference Center in Guizhou Normal University (Hua Xi Campus) | Wan Yi Panorama Hotel |
| August 23rd | 20:00 | Wan Yi Panorama Hotel | Guiyang Longdongbao International Airport |
Warm Reminder
- The hotel check-in time is 14:00 and check-out time is no later than 12:00.
- We'll pay for room costs (breakfasts included). Other expenses including mini bar, laundry, and call, etc. would be kindly paid by yourself.
- The internet access is free in the hotel room. Each room has its own wifi which username will be the room number.
- We recommend that all participants should take out the travel insurance to cover themselves against accident or illness.
Contact
Dr. Xie LuShanghai Center for Bioinformation Center
Email:
Mobile Phone: +86-13301670946
Ms. He Qinwen
Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health
Email:
Mobile Phone: +86-13816978475